Hi,
I'm glad I stumbled upon fat_mat_tableize.py, which should make things easier. I'm trying to extract the FA and MD only, from the .grid output of 3dTrackID PROB.

Here is the command I am using:
fat_mat_tableize.py \
-in_csv tableize_CSV.csv \
-in_listfile tableize_LIST.csv \
-prefix tableizeoutput \
-pars FA MD

Questions:
1. What does this error suggest that I received? NameError: global name 'file_inp' is not defined.

2. Is there a way to extract specific rows/cols from the FA and MD matrices rather than the entire 318x318 matrices (we have 318 rois)? I am only interested in OR-logic. Thus, row 1 / col 1, row 2 / col 2... row 318 / col 318... and NOT row 1 / col 40, for example.

I thought attaching the csvs and .grids here would be helpful for you to see to answer my questions but those aren't valid attachments in this forum. Let me know if I could upload/email them to you.

Thank you very much



Edited 1 time(s). Last edit at 03/17/2021 11:24AM by eji.