AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 18, 2021 10:34PM
Hi there,

I'm currently trying to run a simple 3dLME with the following:

3dLME -prefix final_PCLTotal_LME -jobs 24 \
-model "Time*PCLTotal+age+Gender" \
-qVars "age" \
-ranEff "~1+age" \
-SS_type 3 \
-dataTable @CONN_LME_DataTable.txt

The script successfully reads the input files, but then gets stuck on the model test before killing it after about 5-10 minutes (it does this on its own, I do not end it). I have run file_tool on my script and run the FIXED version, so I am guessing there is a problem with the model since I don't have any GLT coding in the script. I'm not sure what to change about the model, but any advice would be helpful.

Here's the output I get:

Reading input files now...
Reading input files: Done!

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.

Killed
Subject Author Posted

3dLME Model Error / Script Crashing

kyrieamara March 18, 2021 10:34PM

Re: 3dLME Model Error / Script Crashing

gang March 19, 2021 10:41AM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 20, 2021 01:16PM

Re: 3dLME Model Error / Script Crashing

gang March 21, 2021 08:46PM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 22, 2021 05:24PM

Re: 3dLME Model Error / Script Crashing

gang March 23, 2021 08:40AM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 23, 2021 10:54AM

Re: 3dLME Model Error / Script Crashing

gang March 23, 2021 11:31AM

Re: 3dLME Model Error / Script Crashing

kyrieamara March 23, 2021 02:49PM