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JW
April 06, 2021 02:19PM
Dear AFNI experts,

I used the below to3d script for functional data.

to3d -epan -assume_dicom_mosaic -oblique_origin -prefix epi.resting -time:zt 64 404 1400 alt+z SerieMR-0004-*.dcm

And, had error below.

++ to3d: AFNI version=AFNI_19.3.11 (Nov 1 2019) [64-bit]
++ Authored by: RW Cox
++ It is best to use to3d via the Dimon program.
*+ WARNING: TR expressed in milliseconds will be converted to TR=1.400000s
++ WARNING: file /Users/titus/.afni.log is now 7018537356 (7.0 billion) bytes long!
++ Counting images: ** DICOM WARNING, missing VR code in element (0000,004d)
++ DICOM WARNING: indecipherable SIEMENS MOSAIC info (0029 1020) in file SerieMR-0004-0005-1.dcm
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
++ DICOM WARNING: indecipherable SIEMENS MOSAIC info (0029 1020) in file SerieMR-0004-0052-1.dcm
** DICOM WARNING, missing VR code in element (0000,0000)
++ DICOM NOTICE: no more SIEMENS MOSAIC info messages will be printed
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
** DICOM WARNING, missing VR code in element (0000,0000)
total=17162 2D slices
** Number of slices on command line = 17162
** Number of slices needed for -time: = 25856
** Something is wrong with your command line!


The number of dcm files for this subject was the same as the others whose functional data didn't have any issues when running to3d. Could you pleaese let me know what would be the problem here?

Best,
JW
Subject Author Posted

to3d error

JW April 06, 2021 02:19PM

Re: to3d error

Daniel Glen April 06, 2021 03:22PM

Re: to3d error

rick reynolds April 09, 2021 02:50PM

Re: to3d error

rick reynolds April 22, 2021 02:00PM

Re: to3d error Attachments

JW April 23, 2021 09:32PM



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