I ran afni_proc.py-based analysis and it produced no QC folder. I may have done something wrong in setting up the analysis , but I can't figure out what. I would appreciate suggestions...
Here is the relevant part of the output:
apqc_make_tcsh.py -review_style pythonic -subj_dir . -uvar_json out.ss_review_uvars.json
++ Found 40 files for QCing.
Traceback (most recent call last):
File "/home/pawel/abin/apqc_make_tcsh.py", line 563, in <module>
tspace = lat.get_space_from_dset(ap_ssdict['template'])
File "/home/pawel/abin/afnipy/lib_apqc_tcsh.py", line 291, in get_space_from_dset
dset_fullpath = com.so[0]
IndexError: list index out of range
afni_proc call from my script
afni_proc.py \
-subj_id ${subj} \
-script ${odir_ap}/proc.$subj.${state} -scr_overwrite \
-out_dir ${odir_ap}/${subj}.${state}.results \
-blocks ${appy_blocks} \
${appy_blur_param} \
-dsets ${subj_epi} \
-copy_anat "${dset_subj_anat}" \
-anat_has_skull no \
-anat_uniform_method unifize \
-anat_unif_GM yes \
-anat_follower_ROI WMmask epi ${odir_aw}'/'WM_anat_mask \
-anat_follower_erode WMmask \
-radial_correlate_blocks tcat volreg \
-radial_correlate_opts -sphere_rad 14 \
-tcat_remove_first_trs 2 \
-volreg_base_dset "${EPIname}[0]" \
-volreg_align_e2a \
-volreg_tlrc_warp \
-align_epi_strip_method 3dSkullStrip \
-align_opts_aea -cost ${cost_a2e} -feature_size 4 \
-partial_coverage -deoblique on \
-giant_move -cmass cmass \
-check_flip \
-align_epi_ext_dset "${EPIname}[0]" \
-tlrc_base ${refvol} \
-tlrc_NL_warp \
-tlrc_NL_warped_dsets \
${odir_aw}/${subj}*_warp2std_nsu.nii.gz \
${odir_aw}/${subj}*_composite_linear_to_template.1D \
${odir_aw}/${subj}*_shft_WARP.nii.gz \
-regress_anaticor_fast \
-regress_anaticor_radius 20 \
-regress_anaticor_label WMmask \
-regress_motion_per_run \
-regress_apply_mot_types demean deriv \
-regress_censor_motion ${motion_threshold} \
-regress_censor_outliers ${outlier_threshold} \
-regress_est_blur_errts \
-regress_est_blur_epits \
-regress_run_clustsim no \
-html_review_style pythonic \
-execute
