OK, there is no obliquity in the dsets, so that is not responsible for any alignment issues.
I assume that this alignment is the result of FMRIprep processing, but I am not familiar with how FMRIprep allows you to check the alignment. (In the afni_proc.py output QC HTML, there are separate images showing EPI to anatomical alignment, and also anatomical to template alignment, for any of those alignments that are performed).
--pt
