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June 17, 2021 01:39PM
Hello pt!

Thank you for your answer that will really help!
Here is an example of the kind of image that I am working with:


Indeed, I was already using -cost lpa+ZZ that is actually working fine on half of the images. lpc+zz and nmi doesn't work at all.
I am confident that changing the epi strip parameters might help!
I will let you know

Thank you for explaining align_epi_strip_method,
I was also confused when I saw in the align_epi_anat command had two epi strip methods.
Subject Author Posted

-epi_strip in afni_proc.py for monkeys

Doughboys June 14, 2021 08:59PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 16, 2021 03:53PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 16, 2021 05:51PM

Re: -epi_strip in afni_proc.py for monkeys

Doughboys June 17, 2021 01:39PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 17, 2021 02:21PM

Re: -epi_strip in afni_proc.py for monkeys

Doughboys June 17, 2021 03:02PM

Re: -epi_strip in afni_proc.py for monkeys

Pawel June 17, 2021 03:11PM

Re: -epi_strip in afni_proc.py for monkeys

Doughboys June 17, 2021 03:32PM

Re: -epi_strip in afni_proc.py for monkeys

ptaylor June 18, 2021 10:29AM



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