Thanks for the great suggestions, Peter and Daniel!
I'm doing one by one you've suggested.
As for the suggestion by Peter, I've noticed I have subject's Freesurfer atlas after making retinotopic map. So I successfully did the whole procedure and created the conjunction of freesurfer atlas and my four chunks mask.
But I noticed that the T1.nii in SUMA generated after doing Freesurfer things is not aligned with my T1 file after preprocessing procedure (skull strip, deoblique etc.).
Can I align the SUMA files (e.g. apar.aseg.nii) to my epi or skull-stripped T1 data?
Currently, I'm looking at 3dmask_tool, and I've got a mask of the two occipital clusters ('A mask after 3dmask_tool' in the attached) among the four clusters ('A huge cluster' in the attached).
But what if I want to create a mask the removed, temporal side of two cluster which is the bilateral MT+ ('These are my interest' in the attached)?
If this is possible, it would be the best way for my situation!!
Plus, what's the meaning of level for '-dilate_inputs' in 3dmask_tool?
Thank you all so much! Your advice always helpful!
Edited 1 time(s). Last edit at 09/08/2021 02:13AM by Mpark.
