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November 29, 2021 04:11PM
Actually, obliquity seems to be purged with 3dAllineate too...
Anyway, the way to fix it might be to do:

3dWarp -deoblique -prefix ANAT_DEOB.nii.gz [anat dset]
3dWarp -deoblique -prefix EPI_DEOB.nii.gz [epi dset]


I will have the bold and others images a little bit blurred, but I don't see another option...
At least it will fix the obliquity problem for all the other images (T2, DTI) etc.. that need to be co-registrated to the same space using the transfo parameters from the T1.

Please, let me know if it seems completely crazy given my situation,
tks again and my apologies for the number of messages,
hopefully, it will help someone else in the future
Clement
Subject Author Posted

3drefit -deoblique

Doughboys November 12, 2021 01:12PM

Re: 3drefit -deoblique

Doughboys November 12, 2021 02:45PM

Re: 3drefit -deoblique

ptaylor November 12, 2021 02:54PM

Re: 3drefit -deoblique

Doughboys November 12, 2021 03:24PM

Re: 3drefit -deoblique

ptaylor November 12, 2021 03:50PM

Re: 3drefit -deoblique

Doughboys November 12, 2021 04:53PM

Re: 3drefit -deoblique

ptaylor November 12, 2021 05:18PM

Re: 3drefit -deoblique

Doughboys November 12, 2021 05:25PM

Re: 3drefit -deoblique

ptaylor November 12, 2021 05:36PM

Re: 3drefit -deoblique

Doughboys November 22, 2021 04:09PM

Re: 3drefit -deoblique

Daniel Glen November 22, 2021 04:23PM

Re: 3drefit -deoblique

Doughboys November 24, 2021 01:27PM

Re: 3drefit -deoblique

ptaylor November 24, 2021 04:14PM

Re: 3drefit -deoblique

Doughboys November 24, 2021 04:35PM

Re: 3drefit -deoblique

ptaylor November 24, 2021 05:19PM

Re: 3drefit -deoblique

ptaylor November 24, 2021 09:22PM

Re: 3drefit -deoblique

Doughboys November 25, 2021 11:44AM

Re: 3drefit -deoblique

ptaylor November 26, 2021 09:42AM

Re: 3drefit -deoblique

Doughboys November 26, 2021 02:00PM

Re: 3drefit -deoblique

Doughboys November 29, 2021 11:31AM

Re: 3drefit -deoblique

Doughboys November 29, 2021 03:14PM

Re: 3drefit -deoblique

Doughboys November 29, 2021 04:11PM



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