Dane,
Do you mind providing some details about the experimental design? How many tasks/conditions? Under what condition/task are you trying to perform the seed-based correlation analysis?
> 3dSynthesize is being used here (with the matrix output from that activation 3dDeconvolve) to help isolate specific conditions of
> interest (by removing the other conditions, motion, and censors) in order to have a cleaner seed signal from which to run an FC
> correlation analysis with the rest of the brain to investigate the network and connections.
If you followed some webpage I created a long time ago, I should probably deactivate/delete it. The 3dSynthesize approach is really a bad idea because it can only remove the average effect across trials, but not trial-to-trial fluctuations.
Gang
