Hi experts,
I have some issue when trying to run 3dMVM.
It says:
Quote
updating R_LD_LIBRARY_PATH ...
oo Warning:
Failed to load R_io.so with this error message:
Error in dyn.load(ll) :
unable to load shared object '/Users/xiyuezh/abin/R_io.so':
dlopen(/Users/xiyuezh/abin/R_io.so, 6): Library not loaded: /sw/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
Referenced from: /Users/xiyuezh/abin/R_io.so
Reason: image not found
Calls: source ... withVisible -> eval -> eval -> set_R_io -> dyn.load
Execution halted
Unmatched '.
File /Users/xiyuezh/abin/R_io.so exists in this folder. Then I checked
afni_system_check.py -check_all
Quote
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
3dMVM : FAILURE
Error in dyn.load(ll) :
unable to load shared object '/Users/xiyuezh/abin/R_io.so':
dlopen(/Users/xiyuezh/abin/R_io.so, 6): Library not loaded: /sw/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libR.dylib
Referenced from: /Users/xiyuezh/abin/R_io.so
Reason: image not found
Calls: source ... withVisible -> eval -> eval -> set_R_io -> dyn.load
Execution halted
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
R RHOME : /Library/Frameworks/R.framework/Resources
checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
For the summary part, it says:
Quote
========================= summary, please fix: =========================
* just be aware: login shell 'bash', but our code examples use 'tcsh'
* AFNI programs show FAILURE
* check for partial install of PyQt4
* consider installing gcc under homebrew
* consider installing glib under homebrew
* please set DYLD_LIBRARY_PATH to /opt/X11/lib/flat_namespace in tcsh
The computer is Mac Mojave 10.14.6.
AFNI version is Precompiled binary macos_10.12_local: Jan 31 2022 (Version AFNI_22.0.04 'Hadrian')
The R version is 4.1.1 (2021-08-10) -- "Kick Things". Platform: x86_64-apple-darwin17.0 (64-bit).
Could you please help to have a look? Thank you so much!!
Best,
Xiyue
