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April 21, 2022 05:12PM
Hi, Osman-

Hmm, something might have gone wrong with one of hte alignment steps? There should be an automatically-generated QC HTML in the output results directory.

Can you see if there is a directory there starting with "QC_", and then run:
afni_open -b QC_*/index.html &
? That should open the QC HTML in an available browser.

More description on the main QC sections are provided here (though this page is a bit out of date...):
[afni.nimh.nih.gov]
But specifically, check the ve2a (volumetric EPI-to-anatomical alignment) and va2t (volumetric anatomical-to-template alignment), and see how each of those look. My guess is that the EPI-to-anatomical alignment might not have gone well?

Also, what version of AFNI are you using? What is "afni -ver"?

--pt
Subject Author Posted

afni_proc.py example 11b

osman April 20, 2022 07:25PM

Re: afni_proc.py example 11b

ptaylor April 21, 2022 09:55AM

Re: afni_proc.py example 11b Attachments

osman April 21, 2022 05:06PM

Re: afni_proc.py example 11b

ptaylor April 21, 2022 05:12PM

Re: afni_proc.py example 11b

osman April 21, 2022 05:48PM

Re: afni_proc.py example 11b Attachments

ptaylor April 21, 2022 09:28PM

Re: afni_proc.py example 11b Attachments

osman April 28, 2022 12:15PM

Re: afni_proc.py example 11b Attachments

ptaylor April 28, 2022 12:42PM

Re: afni_proc.py example 11b

rick reynolds April 28, 2022 01:06PM

Re: afni_proc.py example 11b Attachments

osman April 28, 2022 07:27PM

Re: afni_proc.py example 11b

osman April 28, 2022 07:30PM

Re: afni_proc.py example 11b

ptaylor April 29, 2022 08:49AM

Re: afni_proc.py example 11b

osman April 29, 2022 10:23AM

Re: afni_proc.py example 11b

ptaylor April 29, 2022 02:52PM



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