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AFNI, SUMA and FATCAT: v23.2.11
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11.
Tutorials, Examples
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11.4.
APQC: afni_proc.py quality control
11.4.
APQC: afni_proc.py quality control
¶
11.4.1. Overview for APQC
Description
Background: what afni_proc.py does
Portability: how to share the APQC
Saving ratings and comments
11.4.2. APQC-HTML navigation: example
Description: the afni_proc.py command
The APQC HTML document
11.4.3. Browsing APQC outputs
Overview
IDs in the HTML page
Command line examples to view HTML output
Using a script to load many APQC-HTML files
Closing browser tabs
Some comments on browsing
Opening images in a new tab
Table of Contents
1. Installation and Background
2. Starting with AFNI
3. Educational resources
4. All program helps
5. AFNI (and afni)
6. SUMA
7. FATCAT
8. Statistics
9. Templates & Atlases
10. Non-human processing
11. Tutorials, Examples
11.1.
Self Guided Demo Scripts
11.2.
AFNI GUI features
11.3.
AFNI general behavior
11.4.
APQC: afni_proc.py quality control
11.4.1. Overview for APQC
11.4.2. APQC-HTML navigation: example
11.4.3. Browsing APQC outputs
11.5.
FATCAT: DWI {Pre-pre-, Pre-, Post-pre}processing
11.6.
FATCAT Visualization
11.7.
Walnut Brain
11.8.
Drawing ROIs
11.9.
Cluster Explorer
11.10.
FATCAT Matrix Plot
11.11.
3dMVM Validator
11.12.
Automatic Images
11.13.
Sound features in AFNI
11.14.
Working with ROIs
11.15.
Using FreeSurfer
11.16.
Reface and Deface datasets
11.17.
SurfLayers Demo
11.18.
Meta analysis examples
12. Demo Material
13. Codex: AFNI Code Examples from publications
14. Citing
15. Developer Documentation
16. Contributors
17. Glossary
18. Main AFNI pages
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