11.3. AFNI general behavior

• 11.3.1. Using volumetric (and other) files in AFNI
  • ‘On-the-Fly’ datasets: general syntax
  • Sub-brick selection: [..]
  • Sub-range selection: <..>
  • Calculated datasets
  • Auto-Tcat datasets
  • Make a volume of arbitary dimensions
• 11.3.2. Using 1D files in AFNI
  • Overview
  • 1D files as AFNI datasets
  • Column selection with [...]
  • Row selection with {...}
  • Direct input of data on the command line with ‘1D:’
  • Transposition with \'
• 11.3.3. General options for AFNI programs
  • Overview and note on default settings
  • Environment variables per-command: -Dname=val
  • Checking environment variable settings: afni -Vname=
  • Overwriting: -overwrite
  • Ignore the default env vars: -skip_afnirc
  • Program help: -hview (and other opts)