11.12. Automatic Images

• 11.12.1. Overview
  • Auto-image making in AFNI
• 11.12.2. Using @chauffeur_afni
  • Introduction
  • Examples, and how to run them
  • Ex. 0: Simple underlay viewing
  • Ex. 1: Moving/selecting view slices
  • Ex. 2: Underlay and overlay viewing (mask example)
  • Ex. 3: Focus box to select view slices
  • Ex. 4: Overlay beta coefs and threshold with stats
  • Ex. 5: Overlay beta coefs and threshold translucently with stats
  • Ex. 6: Overlay beta coefs, threshold with stats and clusterize
  • Ex. 7: Overlay beta coefs, threshold+clusterize translucently
  • Ex. 8: Check alignment with edge view
  • Ex. 10: 4D mode
  • Ex. 11: Other examples of functionality
  • Troubleshooting
• 11.12.3. Using @snapshot_volreg
  • Examples
• 11.12.4. Using @djunct_4d_imager
• 11.12.5. Using 2dcat
  • Introduction
  • Ex. 0: Combine images subject- and slice-wise
  • Ex. 1: Combine subbrick images of a 4D dset
  • Ex. 2: Combine (stats) images from many subj