5. AFNI (and afni)

• 5.1. GUI Guide
  • 5.1.1. AFNI GUI: Startup
  • 5.1.2. AFNI GUI: Main controller
  • 5.1.3. AFNI GUI: Image window
  • 5.1.4. AFNI GUI: Graph window
  • 5.1.5. AFNI GUI: Overlay panel
  • 5.1.6. AFNI GUI: Datamode panel
  • 5.1.7. AFNI GUI: Chooser menu
  • 5.1.8. AFNI GUI: Maps
• 5.2. List of all AFNI GUI tips and keyboard shortcuts
  • 5.2.1. Overview
  • 5.2.2. AFNI For Absolute Beginners
  • 5.2.3. Cursor Shapes and Right-Click Popup Menus
  • 5.2.4. Hidden Clicks to Activate AFNI Features
  • 5.2.5. Keyboard Shortcuts: Image Viewer Window
  • 5.2.6. Keyboard Shortcuts: Graph Viewer Window
  • 5.2.7. Keyboard Shortcuts in the Threshold Slider
• 5.3. List of all AFNI environment variables
  • 5.3.1. Overview
  • 5.3.2. Intro: Unix env vars used by AFNI
  • 5.3.3. Setting env variables in file ~/.afnirc
  • 5.3.4. Env vars: the looong list
  • 5.3.5. Vars for realtime functionality
  • 5.3.6. Vars specific to NIML I/O
  • 5.3.7. Vars for 3dDeconvolve
  • 5.3.8. ATLAS and WHEREAMI env variables
  • 5.3.9. Interacting with other progs and miscellany
• 5.4. List of all startup tips
• 5.5. List of all AFNI colorbars
  • 5.5.1. Colorbars (<=256 colors) and example images
  • 5.5.2. Colorbars (>256 colors) and example images