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  • AFNI, SUMA and FATCAT: v25.1.08 »
  • 3. Educational resources

3. Educational resources¶

  • 3.1. AFNI Bootcamp Recordings
    • 3.1.1. NIH Bootcamp (Oct, 2017)
    • 3.1.2. MIT Bootcamp (May, 2018)
    • 3.1.3. AFNI Academy (2020)
  • 3.2. AFNI Bootcamp handouts
    • 3.2.1. Download all AFNI handouts
    • 3.2.2. Download specific AFNI handout(s)
  • 3.3. (Useful) Outside lectures
    • 3.3.1. Overview
    • 3.3.2. FMRIF Summer Course
    • 3.3.3. Andy’s Brain Blog
  • Unix Tutorial
    • Setup Pages
    • Basic Unix Tutorial
    • Unix commands
  • 3.4. Shell script and command line tips
    • 3.4.1. Overview
    • 3.4.2. Know your shell type
    • 3.4.3. Make and run a shell script
    • 3.4.4. Check if a variable exists (tcsh)
    • 3.4.5. Store array in a variable (tcsh)
    • 3.4.6. Extract parts of filenames and/or paths (tcsh)
    • 3.4.7. Finding paths of programs (shell/tcsh)
    • 3.4.8. Make uniformly spaced numbers (shell/tcsh)
    • 3.4.9. String-formatting with printf (shell/tcsh)
    • 3.4.10. Simple math operations (tcsh)
    • 3.4.11. More general math operations, via bc (shell)
    • 3.4.12. Display blocks of text with cat << EOF ... EOF
    • 3.4.13. Replace chars in strings (e.g., rename files)

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Table of Contents

  • 1. Installation and Background
  • 2. Starting with AFNI
  • 3. Educational resources
    • 3.1. AFNI Bootcamp Recordings
    • 3.2. AFNI Bootcamp handouts
    • 3.3. (Useful) Outside lectures
    • Unix Tutorial
    • 3.4. Shell script and command line tips
  • 4. All program helps
  • 5. AFNI GUI (afni)
  • 6. SUMA GUI (suma)
  • 7. FATCAT
  • 8. NIFTI
  • 9. Statistics
  • 10. Templates & Atlases
  • 11. Non-human processing
  • 12. Tutorials, Examples
  • 13. Demo Material
  • 14. Codex: AFNI Code Examples from publications
  • 15. Citations and Reference Works
  • 16. Developer Documentation
  • 17. Contributors
  • 18. Glossary
  • 19. Main AFNI pages

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