2. Educational resources

• 2.1. AFNI Bootcamp Lecture Recordings
  • 2.1.1. Overview
  • 2.1.2. Bootcamp Videos
  • 2.1.3. Supplementary lectures
• 2.2. (Useful) Outside lectures
  • 2.2.1. Overview
  • 2.2.2. Other AFNI Bootcamp recordings
  • 2.2.3. FMRIF Summer Course
• 2.3. List of all startup tips
• 2.4. List of all AFNI colorbars
  • 2.4.1. Colorbars and example images
• 2.5. Classified program list
  • 2.5.1. Interactive viewer GUIs
  • 2.5.2. Voxelwise calcs, esp. stats and tests
  • 2.5.3. Get info/stats within ROIs
  • 2.5.4. Build FMRI pipelines
  • 2.5.5. Align/register/warp/axialize spatially
  • 2.5.6. SUMA surface calculations, formats and viewing
  • 2.5.7. Mask/skull-strip/segment
  • 2.5.8. Make/edit/evaluate stimulus timing files
  • 2.5.9. Edit dset headers
  • 2.5.10. Compute various numbers from datasets
  • 2.5.11. Blur and smooth dsets
  • 2.5.12. Volume editing/image processing
  • 2.5.13. Update AFNI, install software (not demos)
  • 2.5.14. Simple dset calcs (-> make new dsets)
  • 2.5.15. Resting state FMRI parameters
  • 2.5.16. Make/edit correlation matrices
  • 2.5.17. Make/edit ROIs and clusters, resample
  • 2.5.18. Edit dsets: concatenate, split, add/remove slices
  • 2.5.19. Drive AFNI/SUMA, make images/snapshots/montages
  • 2.5.20. Deal with 1D time series
  • 2.5.21. DWI/DTI/diffusion-related
  • 2.5.22. Convert surfaces from other software
  • 2.5.23. Convert statistics and p-values
  • 2.5.24. Compare dset volumes (masks or valued)
  • 2.5.25. Time series pre-processing
  • 2.5.26. Time series analysis
  • 2.5.27. Quality checks (for 3D+time datasets or results)
  • 2.5.28. Miscellaneous file manipulations
  • 2.5.29. MVM modelling of (correlational or structural) matrices
  • 2.5.30. Generate model 1D time series
  • 2.5.31. Fourier related, time series/freq
  • 2.5.32. Dset histograms
  • 2.5.33. Download/install demos
  • 2.5.34. DICOM info and conversion
  • 2.5.35. Copy/convert/manipulate dsets
  • 2.5.36. Changing dset spatial structure
  • 2.5.37. Change dset temporal structure
  • 2.5.38. Supplementary/open programs included in AFNI
  • 2.5.39. Supplemental/underlying programs (no desc needed)
  • 2.5.40. Simulate/generate dsets
  • 2.5.41. Miscellaneous visualization tools
  • 2.5.42. Miscellaneous utilities
  • 2.5.43. Unclassed
  • 2.5.44. R programs (in R; called by others)