2. Educational resources

• 2.1. AFNI Bootcamp Recordings
  • 2.1.1. NIH Bootcamp (Oct, 2017)
  • 2.1.2. MIT Bootcamp (May, 2018)
• 2.2. AFNI Bootcamp handouts
  • 2.2.1. Download all AFNI handouts
  • 2.2.2. Download specific AFNI handout(s)
• 2.3. (Useful) Outside lectures
  • 2.3.1. Overview
  • 2.3.2. FMRIF Summer Course
• 2.4. List of all startup tips
• 2.5. List of all AFNI colorbars
  • 2.5.1. Colorbars and example images
• 2.6. Classified program list
  • 2.6.1. Interactive viewer GUIs
  • 2.6.2. Voxelwise calcs, esp. stats and tests
  • 2.6.3. Get info/stats within ROIs
  • 2.6.4. Build FMRI pipelines
  • 2.6.5. Align/register/warp/axialize spatially
  • 2.6.6. SUMA surface calculations, formats and viewing
  • 2.6.7. Mask/skull-strip/segment
  • 2.6.8. Make/edit/evaluate stimulus timing files
  • 2.6.9. Edit dset headers
  • 2.6.10. Compute various numbers from datasets
  • 2.6.11. Blur and smooth dsets
  • 2.6.12. Volume editing/image processing
  • 2.6.13. Update AFNI, install software (not demos)
  • 2.6.14. Simple dset calcs (-> make new dsets)
  • 2.6.15. Resting state FMRI parameters
  • 2.6.16. Make/edit correlation matrices
  • 2.6.17. Make/edit ROIs and clusters, resample
  • 2.6.18. Edit dsets: concatenate, split, add/remove slices
  • 2.6.19. Drive AFNI/SUMA, make images/snapshots/montages
  • 2.6.20. Deal with 1D time series
  • 2.6.21. DWI/DTI/diffusion-related
  • 2.6.22. Convert surfaces from other software
  • 2.6.23. Convert statistics and p-values
  • 2.6.24. Compare dset volumes (masks or valued)
  • 2.6.25. Time series pre-processing
  • 2.6.26. Time series analysis
  • 2.6.27. Quality checks (for 3D+time datasets or results)
  • 2.6.28. Miscellaneous file manipulations
  • 2.6.29. MVM modelling of (correlational or structural) matrices
  • 2.6.30. Generate model 1D time series
  • 2.6.31. Fourier related, time series/freq
  • 2.6.32. Dset histograms
  • 2.6.33. Download/install demos
  • 2.6.34. DICOM info and conversion
  • 2.6.35. Copy/convert/manipulate dsets
  • 2.6.36. Changing dset spatial structure
  • 2.6.37. Change dset temporal structure
  • 2.6.38. Supplementary/open programs included in AFNI
  • 2.6.39. Supplemental/underlying programs (no desc needed)
  • 2.6.40. Simulate/generate dsets
  • 2.6.41. Miscellaneous visualization tools
  • 2.6.42. Miscellaneous utilities
  • 2.6.43. Unclassed
  • 2.6.44. R programs (in R; called by others)