3. Educational resources

• 3.1. AFNI Bootcamp Recordings
  • 3.1.1. NIH Bootcamp (Oct, 2017)
  • 3.1.2. MIT Bootcamp (May, 2018)
  • 3.1.3. AFNI Academy (2020)
• 3.2. AFNI Bootcamp handouts
  • 3.2.1. Download all AFNI handouts
  • 3.2.2. Download specific AFNI handout(s)
• 3.3. (Useful) Outside lectures
  • 3.3.1. Overview
  • 3.3.2. FMRIF Summer Course
  • 3.3.3. Andy’s Brain Blog
• 3.4. Unix Tutorial
  • 3.4.1. Setup Pages
  • 3.4.2. Basic Unix Tutorial
  • 3.4.3. Unix commands
• 3.5. Shell script and command line tips
  • 3.5.1. Overview
  • 3.5.2. Know your shell type
  • 3.5.3. Make and run a shell script
  • 3.5.4. Check if a variable exists (tcsh)
  • 3.5.5. Store array in a variable (tcsh)
  • 3.5.6. Extract parts of filenames and/or paths (tcsh)
  • 3.5.7. Finding paths of programs (shell/tcsh)
  • 3.5.8. Make uniformly spaced numbers (shell/tcsh)
  • 3.5.9. String-formatting with printf (shell/tcsh)
  • 3.5.10. Simple math operations (tcsh)
  • 3.5.11. More general math operations, via bc (shell)
  • 3.5.12. Display blocks of text with cat << EOF ... EOF
  • 3.5.13. Replace chars in strings (e.g., rename files)