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  • AFNI, SUMA and FATCAT: v21.1.02 »
  • 1. Installation and Background

1. Installation and Background¶

  • 1.1. Install AFNI on Your Own Computer
    • 1.1.1. Overview
    • 1.1.2. Linux, Ubuntu 15.10 and earlier
    • 1.1.3. Linux, Ubuntu 16.04 - 17.10
    • 1.1.4. Linux, Ubuntu 18.04
    • 1.1.5. Linux, Ubuntu 20.04
    • 1.1.6. Linux, Fedora and Red Hat
    • 1.1.7. Mac OS
    • 1.1.8. macOS: The App-based system setup (10.13-15)
    • 1.1.9. Windows 10: Windows Subsystem for Linux (WSL)
    • 1.1.10. old Windows 10: Bash on Ubuntu (beta)
  • 1.2. Install AFNI on Administered Systems
    • 1.2.1. Mac OS (admin’ed): the administrator part
    • 1.2.2. Mac OS (admin’ed): the regular user part
  • 1.3. Work with Docker/Containerized AFNI
    • 1.3.1. Pre-built Dockerfile
    • 1.3.2. Neurodocker
  • 1.4. Download other/specific AFNI/SUMA software
    • 1.4.1. Overview
    • 1.4.2. Update existing AFNI binaries
    • 1.4.3. Download current precompiled AFNI binaries
    • 1.4.4. To: download the AFNI source code
    • 1.4.5. To: browse all AFNI packages (and atlases)
  • 1.5. Unix Tutorial
    • 1.5.1. Setup Pages
    • 1.5.2. Basic Unix Tutorial
    • 1.5.3. Unix commands
  • 1.6. Prep for Bootcamp
  • 1.7. Miniconda: Python(s) in a convenient setup
    • 1.7.1. Overview
    • 1.7.2. Set up Conda (verbose)
    • 1.7.3. Set up Conda (quick)
    • 1.7.4. Fancier things with Conda
    • 1.7.5. A note on making envs and choosing modules

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Table of Contents

  • 1. Installation and Background
    • 1.1. Install AFNI on Your Own Computer
    • 1.2. Install AFNI on Administered Systems
    • 1.3. Work with Docker/Containerized AFNI
    • 1.4. Download other/specific AFNI/SUMA software
    • 1.5. Unix Tutorial
    • 1.6. Prep for Bootcamp
    • 1.7. Miniconda: Python(s) in a convenient setup
  • 2. Educational resources
  • 3. All program helps
  • 4. Publication-based code examples
  • 5. SUMA
  • 6. FATCAT
  • 7. Statistics
  • 8. Templates & Atlases
  • 9. Non-human processing
  • 10. Tutorials, Examples
  • 11. Demo Material
  • 12. Developer Documentation
  • 13. References, papers and citations
  • 14. Contributors
  • 15. Glossary
  • 16. Main AFNI pages

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