1. Installation and Background

• 1.1. Install AFNI on Your Own Computer
  • 1.1.1. Overview
  • 1.1.2. Linux, Ubuntu 15.10 and earlier
  • 1.1.3. Linux, Ubuntu 16.04 - 17.10
  • 1.1.4. Linux, Ubuntu 18.04
  • 1.1.5. Linux, Ubuntu 20.04
  • 1.1.6. Linux, Fedora and Red Hat
  • 1.1.7. Mac OS
  • 1.1.8. macOS: The App-based system setup (10.13-15)
  • 1.1.9. Windows 10: Windows Subsystem for Linux (WSL)
  • 1.1.10. old Windows 10: Bash on Ubuntu (beta)
• 1.2. Install AFNI on Administered Systems
  • 1.2.1. Mac OS (admin’ed): the administrator part
  • 1.2.2. Mac OS (admin’ed): the regular user part
• 1.3. Work with Containerized AFNI
  • 1.3.1. Pre-built Dockerfile
  • 1.3.2. Neurodocker
• 1.4. Download other/specific AFNI/SUMA software
  • 1.4.1. Overview
  • 1.4.2. Update existing AFNI binaries
  • 1.4.3. Download current precompiled AFNI binaries
  • 1.4.4. To: download the AFNI source code
  • 1.4.5. To: browse all AFNI packages (and atlases)
• 1.5. Unix Tutorial
  • 1.5.1. Setup Pages
  • 1.5.2. Basic Unix Tutorial
  • 1.5.3. Unix commands
• 1.6. Prep for Bootcamp
• 1.7. Miniconda: Python(s) in a convenient setup
  • 1.7.1. Overview
  • 1.7.2. Set up Conda (verbose)
  • 1.7.3. Set up Conda (quick)
  • 1.7.4. Fancier things with Conda
  • 1.7.5. A note on making envs and choosing modules