1.1. The Authoritative HowTo for Installing AFNI on Your Own Computer

• 1.1.1. The Indispensable Overview
  • Preamble Ramble
  • Setting up systems
  • Optional reading: technical notes around installing
• 1.1.2. Linux, Ubuntu 15.10 and earlier: The essential system setup
  • What to do?
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.3. Linux, Ubuntu 16.04 - 17.10: The essential system setup
  • What to do?
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.4. Linux, Ubuntu 18.04: The essential system setup
  • What to do?
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.5. Linux, Fedora and Red Hat: The essential system setup
  • What to do?
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.6. Mac OS: The essential system setup
  • What to do?
  • Setup terminal
  • Install Xcode and XQuartz
  • Install AFNI binaries
  • Reboot
  • Install R
  • Install Netpbm
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
  • Install PyQt4, via JDK and fink (optional)
• 1.1.7. macOS: The App-based system setup
  • Welcome to the Jungle
  • Take the File and Run
  • Break It Down Again
  • Install Netpbm
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.8. Windows 10, “Windows Subsystem for Linux (WSL)”: The essential system setup
  • Install prerequisite: Getting Linux
  • Install prerequisite: VcXsrv Windows X Server
  • Install prerequisite: AFNI and package dependencies
  • Useful setup tips (optional, but recommended)
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.9. *old* Windows 10, “Bash on Ubuntu” (beta): The essential system setup
  • Important notice
  • Notes
  • Install prerequisite: “Bash on Windows”
  • Install prerequisite: Xming X Server for Windows
  • Install prerequisite: AFNI and package dependencies
  • Useful setup tips (optional, but recommended)
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)