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  • AFNI, SUMA and FATCAT: v25.1.08 »
  • 7. FATCAT

7. FATCAT¶

  • 7.1. FATCAT Commands
    • 7.1.1. Overview
    • 7.1.2. Demo data sets and scripts
    • 7.1.3. Other: preprocessing and HARDI considerations
    • 7.1.4. Notation Notes
    • 7.1.5. Citation Notes
  • 7.2. 1dDW_Grad_o_Mat++: dealing with DW gradients
    • 7.2.1. Overview
    • 7.2.2. Operations
  • 7.3. @GradFlipTest: checking on gradient flips
    • 7.3.1. Overview
    • 7.3.2. Picturing the effect of flipping
    • 7.3.3. Using @GradFlipTest
    • 7.3.4. Combining with 1dDW_Grad_o_Mat++ (or fat_proc functions)
    • 7.3.5. Caveats with @GradFlipTest
  • 7.4. 3dROIMaker: making (networks of) ROIs
    • 7.4.1. Overview
    • 7.4.2. Operation
    • 7.4.3. Using anatomical tissues and diffusion maps
    • 7.4.4. Connectome Parcellation
  • 7.5. 3dTrackID: making tracts
    • 7.5.1. Overview
    • 7.5.2. Modus operandi
    • 7.5.3. Outputs common to all modes
    • 7.5.4. Outputs specific to {DET|MINIP} modes
    • 7.5.5. Viewing tracked outputs
    • 7.5.6. Inputs for tracking
../_images/FATCAT_logo.jpg

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Table of Contents

  • 1. Installation and Background
  • 2. Starting with AFNI
  • 3. Educational resources
  • 4. All program helps
  • 5. AFNI GUI (afni)
  • 6. SUMA GUI (suma)
  • 7. FATCAT
    • 7.1. FATCAT Commands
    • 7.2. 1dDW_Grad_o_Mat++: dealing with DW gradients
    • 7.3. @GradFlipTest: checking on gradient flips
    • 7.4. 3dROIMaker: making (networks of) ROIs
    • 7.5. 3dTrackID: making tracts
  • 8. NIFTI
  • 9. Statistics
  • 10. Templates & Atlases
  • 11. Non-human processing
  • 12. Tutorials, Examples
  • 13. Demo Material
  • 14. Codex: AFNI Code Examples from publications
  • 15. Citations and Reference Works
  • 16. Developer Documentation
  • 17. Contributors
  • 18. Glossary
  • 19. Main AFNI pages

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