6. FATCAT

• 6.1. FATCAT Commands
  • 6.1.1. Overview
  • 6.1.2. Demo data sets and scripts
  • 6.1.3. Other: preprocessing and HARDI considerations
  • 6.1.4. Notation Notes
  • 6.1.5. Citation Notes
• 6.2. 1dDW_Grad_o_Mat++: dealing with DW gradients
  • 6.2.1. Overview
  • 6.2.2. Operations
• 6.3. @GradFlipTest: checking on gradient flips
  • 6.3.1. Overview
  • 6.3.2. Picturing the effect of flipping
  • 6.3.3. Using @GradFlipTest
  • 6.3.4. Combining with 1dDW_Grad_o_Mat++ (or fat_proc functions)
  • 6.3.5. Caveats with @GradFlipTest
• 6.4. 3dROIMaker: making (networks of) ROIs
  • 6.4.1. Overview
  • 6.4.2. Operation
  • 6.4.3. Using anatomical tissues and diffusion maps
  • 6.4.4. Connectome Parcellation
• 6.5. 3dTrackID: making tracts
  • 6.5.1. Overview
  • 6.5.2. Modus operandi
  • 6.5.3. Outputs common to all modes
  • 6.5.4. Outputs specific to {DET|MINIP} modes
  • 6.5.5. Viewing tracked outputs
  • 6.5.6. Inputs for tracking