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AFNI, SUMA and FATCAT: v24.3.00
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8.
NIFTI
8.
NIFTI
¶
8.1.
The NIFTI format
8.1.1. Overview
8.1.2. NIfTI and AFNI: working together
8.1.3. The NIfTI Data Format Working Group
8.2.
NIFTI and BRIK/HEAD: Similarities, differences and mappings
8.2.1. Overview
8.2.2. Dataset: one or two files
8.2.3. Headers: Minimal/fixed (+extensions) or flexible
8.2.4. Spaces:
qform_code
and
sform_code
or space name(s)
8.3. Space names,
qform_code
and
sform_code
8.3.1. Overview
8.3.2. NIFTI:
qform_code
and
sform_code
8.3.3. BRIK/HEAD: space names; map to/from NIFTI
8.3.4. GUI visualization, with space considerations
8.3.5. Get header information
8.4.
Using NIFTI data in AFNI
8.4.1. Overview
8.4.2. Input NIFTI datasets to AFNI programs
8.4.3. Output NIFTI datasets from AFNI programs
8.4.4. Convert BRIK/HEAD -> NIFTI
8.4.5. Convert NIFTI -> BRIK/HEAD
Table of Contents
1. Installation and Background
2. Starting with AFNI
3. Educational resources
4. All program helps
5. AFNI GUI (afni)
6. SUMA GUI (suma)
7. FATCAT
8. NIFTI
8.1.
The NIFTI format
8.2.
NIFTI and BRIK/HEAD: Similarities, differences and mappings
8.3. Space names,
qform_code
and
sform_code
8.4.
Using NIFTI data in AFNI
9. Statistics
10. Templates & Atlases
11. Non-human processing
12. Tutorials, Examples
13. Demo Material
14. Codex: AFNI Code Examples from publications
15. Citations and Reference Works
16. Developer Documentation
17. Contributors
18. Glossary
19. Main AFNI pages
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