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  • 8. NIFTI

8. NIFTI¶

  • 8.1. The NIFTI format
    • 8.1.1. Overview
    • 8.1.2. NIfTI and AFNI: working together
    • 8.1.3. The NIfTI Data Format Working Group
  • 8.2. NIFTI and BRIK/HEAD: Similarities, differences and mappings
    • 8.2.1. Overview
    • 8.2.2. Dataset: one or two files
    • 8.2.3. Headers: Minimal/fixed (+extensions) or flexible
    • 8.2.4. Spaces: qform_code and sform_code or space name(s)
  • 8.3. Space names, qform_code and sform_code
    • 8.3.1. Overview
    • 8.3.2. NIFTI: qform_code and sform_code
    • 8.3.3. BRIK/HEAD: space names; map to/from NIFTI
    • 8.3.4. GUI visualization, with space considerations
    • 8.3.5. Get header information
  • 8.4. Using NIFTI data in AFNI
    • 8.4.1. Overview
    • 8.4.2. Input NIFTI datasets to AFNI programs
    • 8.4.3. Output NIFTI datasets from AFNI programs
    • 8.4.4. Convert BRIK/HEAD -> NIFTI
    • 8.4.5. Convert NIFTI -> BRIK/HEAD

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Table of Contents

  • 1. Installation and Background
  • 2. Starting with AFNI
  • 3. Educational resources
  • 4. All program helps
  • 5. AFNI GUI (afni)
  • 6. SUMA GUI (suma)
  • 7. FATCAT
  • 8. NIFTI
    • 8.1. The NIFTI format
    • 8.2. NIFTI and BRIK/HEAD: Similarities, differences and mappings
    • 8.3. Space names, qform_code and sform_code
    • 8.4. Using NIFTI data in AFNI
  • 9. Statistics
  • 10. Templates & Atlases
  • 11. Non-human processing
  • 12. Tutorials, Examples
  • 13. Demo Material
  • 14. Codex: AFNI Code Examples from publications
  • 15. Citations and Reference Works
  • 16. Developer Documentation
  • 17. Contributors
  • 18. Glossary
  • 19. Main AFNI pages

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