1.3. Work with Containerized AFNI¶
1.3.1. Pre-built Dockerfile¶
The continuous integration set up on AFNI’s Github uses CircleCi and pushes to a Docker Hub account when it succeeds (thanks, Dylan and Jakub!). It is built with the Dockerfile in the base directory of the AFNI codebase and uses the CircleCi yml file here.
To use the container, copy+paste:
docker pull afni/afni
docker run --rm -ti afni/afni
To develop using that build environment, run the following from the afni repository:
docker run --rm -ti -v $PWD:/opt/afni afni/afni
and there you have it.
1.3.2. Neurodocker¶
Please also check out Neurodocker for examples of commands to build Dockerfiles and Singularity with AFNI (thanks, Jakub!):
