1.2.1. Mac OS (admin’ed): the administrator part¶
What to do?¶
Here we describe the administrator’s part of the AFNI installation and system setup for administered Mac OS versions 10.9-15.
Root privilege is required for the instruction on this page.
These are accompanied by instructions for regular users, which need to be performed after in order to complete the AFNI setup.
Install Xcode and XQuartz¶
- … OS X >= 10.11, click on this link:Then click on the “Quick Download” DMG, and follow the instructions to install.
… OS X 10.9 and 10.10, copy+paste:
Purpose: These install Xcode command line tools (needed for the gcc compiler et al.) and XQuartz (the desktop manager needed to run X11 programs, such as
- Click on this link:Purpose: Get R-3.6.3 (a recent, but not the most recent, version of R).
sudo rPkgsInstall -pkgs ALL
Purpose: Get specific R packages needed for AFNI programs.
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
brew install netpbm
Purpose: Install “netpbm”, which has functionality for converting
image formats (such as to PNG) and is used in several programs like
@chauffeur_afni and others. Uses the
homebrew to do the installation.