3.2. AFNI Bootcamp handouts

3.2.1. Download all AFNI handouts

A lot of material about using the AFNI software toolbox are kept locked in the secret afni_handouts vaults. Now, for the first time in history, they are also available from this webpage!

  1. To download the handouts directory, do any one of the following:

    • (Fastest!) Copy+paste to a terminal:

      afni_open -aw afni_handouts.tgz
      
    • Click this download link: (current) AFNI handouts directory

    • Copy+paste to a terminal:

      curl -O https://afni.nimh.nih.gov/pub/dist/edu/data/CD/afni_handouts.tgz
      
    • Copy+paste to a terminal:

      wget https://afni.nimh.nih.gov/pub/dist/edu/data/CD/afni_handouts.tgz
      
  2. To open+unpack the directory, copy+paste this to a terminal:

    tar -xvf afni_handouts.tgz
    

    ... which should produce a directory called “afni_handouts/” in that location.

Note

If you are preparing to attend an AFNI Bootcamp, know that this afni_handouts directory is also part of the Bootcamp data download. You can download the whole Bootcamp data directory from here, or you can do it as part of setting up AFNI on your computer, following instructions for your particular operating system listed here).

3.2.2. Download specific AFNI handout(s)

If you would like to get just an individual handout or two from the directory, you can do that in a straightforward manner. The following command will download the particular file to your current location, and open it using an application on your computer.

Copy+paste:

afni_open -aw FILE_NAME

where FILE_NAME can be any file in the currently available afni_handouts directory, listed in the following table (where each file name is now Mandelkowianly clickable).

Current files in afni_handouts directory

advanced_vis_notes.txt

afni23_restingstate.pdf

afni00_cmds_unix.txt

afni30_vol_dset_basics.pdf

afni00_commands_describe.txt

afni32_group_analysis.pdf

afni00_unix.pdf

afni35_GroupAna_HO.pdf

afni00_unix_tree.pdf

afni41_results_reporting.pdf

afni01_cmds.txt

afni42_qc_project.pdf

afni01_intro.pdf

afni43_qc_afni.pdf

afni03_cmds_chauffeur.txt

afni50_templates_atlases.pdf

afni03_commands.txt

afni51_slice_timing.pdf

afni03_interactive.pdf

chauffeur_demo.txt

afni05_regression.pdf

contributor_connections.niml.dset

afni07_advanced.pdf

FATCAT_01_background_dti.pdf

afni07_ETAC.pdf

FATCAT_02_dti_tracking_intro.pdf

afni10_volreg_talairach_extras.pdf

FATCAT_03_dti_tracking_funcs.pdf

afni10_volreg_talairach.pdf

FATCAT_04_netw_stats_mvm.pdf

afni11_cmds_roi.txt

FATCAT_05_suppl_trcomp.pdf

afni11_roi.pdf

FATCAT_HO.pdf

afni14_alignment.pdf

index.html

afni14_cmds_alignment.txt

nih_info

afni16_start_to_finish.pdf

reference

afni19_cmds_basic.txt

RegressionHandsOn.pdf

AFNI_2020_03_NIH_5day_schedule.pdf

suma_fatcat.pdf

AFNI_2024_10_NIH_Virtual1_3day_schedule.pdf

suma_keystrokes.txt

AFNI_2024_11_LIBR_5day_schedule.pdf

suma.pdf

afni20_instastuff.pdf

supplements

afni22_indiana.pdf