2.2. AFNI Bootcamp handouts

2.2.1. Download all AFNI handouts

A lot of material about using the AFNI software toolbox are kept locked in the secret afni_handouts vaults. Now, for the first time in history, they are also available from this webpage!

  1. To download the handouts directory, do any one of the following:

    • (Fastest!) Copy+paste to a terminal:

      afni_open -aw afni_handouts.tgz
      
    • Click this download link: (current) AFNI handouts directory

    • Copy+paste to a terminal:

      curl -O https://afni.nimh.nih.gov/pub/dist/edu/data/CD/afni_handouts.tgz
      
    • Copy+paste to a terminal:

      wget https://afni.nimh.nih.gov/pub/dist/edu/data/CD/afni_handouts.tgz
      
  2. To open+unpack the directory, copy+paste this to a terminal:

    tar -xvf afni_handouts.tgz
    

    ... which should produce a directory called “afni_handouts/” in that location.

Note

If you are preparing to attend an AFNI Bootcamp, know that this afni_handouts directory is also part of the Bootcamp data download. You can download the whole Bootcamp data directory from here, or you can do it as part of setting up AFNI on your computer, following instructions for your particular operating system listed here).

2.2.2. Download specific AFNI handout(s)

If you would like to get just an individual handout or two from the directory, you can do that in a straightforward manner. The following command will download the particular file to your current location, and open it using an application on your computer.

Copy+paste:

afni_open -aw FILE_NAME

where FILE_NAME can be any file in the currently available afni_handouts directory, listed in the following table (where each file name is now Mandelkowianly clickable).

Current files in afni_handouts directory

3dQwarp.pdf

afni_proc.pdf

advanced_vis_notes.txt

afni_tips.pdf

afni00_unix.pdf

BiasSources_RS-FMRI.pdf

afni01_intro.pdf

bootcamp_schedule_dti_2018_10_22.pdf

afni02_to3d.pdf

bootcamp_schedule_dti_2019_11_prelim.pdf

afni03_interactive.pdf

bootcamp_schedule_dti_2020_04_03.pdf

afni04_fmri.pdf

brainhack_afni_driving.txt

afni05_regression.pdf

Clusters_2017.pdf

afni06_decon.pdf

Connectivity.pdf

afni07_advanced.pdf

contributor_connections.niml.dset

afni07_ETAC.pdf

deface_anat.csh

afni09_render.pdf

dir_struct.pdf

afni09_render_work.txt

driving_afni_images.tcsh

afni10_volreg_talairach_extras.pdf

Driving_Afni+Suma.pdf

afni10_volreg_talairach.pdf

DTI.pdf

afni11_roi_cmds.txt

ETAC_clone.pdf

afni11_roi.pdf

ExptDsgn.pdf

afni14_alignment_cmds_3dvolreg.txt

FATCAT_01_background_dti.pdf

afni14_alignment.pdf

FATCAT_02_dti_tracking_intro.pdf

afni15_templates_atlases.pdf

FATCAT_03_dti_tracking_funcs.pdf

afni16_start_to_finish.pdf

FATCAT_04_netw_stats_mvm.pdf

afni17_ht03.pdf

FATCAT_HO.pdf

afni19_jazz_answers.pdf

FMRI_basics.pdf

afni19_jazz_hints.pdf

global_process_commands.txt

afni19_jazz.pdf

global_process_outline.txt

AFNI_2018_12_SCNU_5day_schedule.pdf

index.html

AFNI_2019_03_NIH_5day_schedule.pdf

intro_notes.txt

AFNI_2019_04_UWMilwaukee_5day_schedule_rev.pdf

JewelBox.pdf

AFNI_2019_10_NIH_3day_schedule_Kansas.pdf

MiscRoundup.pdf

AFNI_2019_11_NIH_5day_schedule.pdf

nih_campus_map_highlightsC.pdf

AFNI_2020_03_LIBR_5day_schedule.pdf

PPI.pdf

AFNI_2020_03_NIH_5day_schedule.pdf

QuickTasks.doc.pdf

afni20_instastuff.pdf

QuickTasks.pptx.pdf

afni22_indiana.pdf

Qwarp.pdf

afni23_restingstate.pdf

RegressionHandsOn.pdf

afni24_GroupAna.pdf

RestingAFNI.pdf

afni25_GroupAna_HO.pdf

RestingState_Denoising.pdf

afni26_ROI-based-modeling.pdf

RestingState.pdf

afni30_vol_dset_basics.pdf

SliceTiming.pdf

afni31_sidedness_tests.pdf

SomeScripts.pdf

afni40_plm_GroupAna.pdf

suma_fatcat.pdf

afni_clustering_etac.pdf

suma_keystrokes.txt

AFNI_global_datasets.pdf

suma.pdf

AFNI_interactive2.pdf

TORTOISE_Okan.pdf

AFNIintergoals.txt

zebrafish_suma.mpg

AFNI_Mar2019_dti_1day_schedule.pdf