5.1.7. AFNI GUI: Chooser menu

Dataset Chooser

Open chooser window

  • Click the UnderLay or OverLay button to open a dataset chooser window.

../../_images/afni_controller_window_under_over_lay.png

Chooser window details

  • The dialog window will indicate Underlay or Overlay coresponding to which button you clicked.

  • The chooser will list the datasets available in the current directory.

  • By default when you start afni, it will automatically load the first dataset alphabetically and that will be selected in your chooser menu. (You can set the AFNI_START_SMALL environment variable to YES which will default to loading the dataset with the smallest file size first for speed)

  • The left column has prefix names of datasets.

    • Datasets without an extension are in afni’s .BRIK and .HEAD format.

    • NIFTI formatted dataset will show the .nii or .nii.gz extension.

  • The right column has a little information about each dataset.

    • How dataset was classified when it was created. Usually from to3d, dcm2nii_afni, dimon, etc..

    • Number of sub-bricks.

    • The * indicates that the dataset can be graphed (see here).

    • The z at the end indicates that the dataset is compressed.

  • In this example:

    • FT_anat is an anatomical bucket dataset with 1 sub-brick and is in uncompressed afni format.

    • The next 3 datasets are eco-planar (EPI) datasets with 152 sub-bricks (TRs) in uncompressed afni format.

    • The next 2 datasets are eco-planar (EPI) datasets with 152 sub-bricks (TRs) in NIFTI format. One uncompressed the other compressed.

../../_images/dataset_chooser_underlay.png

To choose a dataset

  • Click on label, or scroll with mouse scroll-wheel, use keyboard, arrows, or click the Index up / down arrows.

  • Press Apply button to select the highlighted dataset, and also keep the chooser window open.

  • Press Set button to select the highlighted dataset, and also close the chooser window.

  • Set environment variable AFNI_DATASET_BROWSE to YES to have AFNI switch to that dataset immediately upon selection (don’t need to use Apply or Set).

  • Environment variables can be set in your .afnirc file, or by using the Edit Environment control panel (cf. Define DatamodeMisc).

../../_images/dataset_chooser_underlay.png

Jump within GUI Guide

Starting

Main controller

Image window

Graph window

Overlay panel

Datamode panel

Chooser menu

Maps