Table of Contents
- 1. Installation and Background
- 2. Starting with AFNI
- 3. Educational resources
- 4. All program helps
- 5. AFNI GUI (afni)
- 6. SUMA GUI (suma)
- 7. FATCAT
- 8. NIFTI
- 9. Statistics
- 10. Templates & Atlases
- 11. Non-human processing
- 12. Tutorials, Examples
- 12.1. Self Guided Demo Scripts
- 12.2. AFNI GUI features
- 12.3. AFNI general behavior
- 12.4. APQC: afni_proc.py quality control
- 12.5. FATCAT: DWI {Pre-pre-, Pre-, Post-pre}processing
- 12.6. FATCAT Visualization
- 12.7. Walnut Brain
- 12.8. Drawing ROIs
- 12.9. Cluster Explorer
- 12.10. FATCAT Matrix Plot
- 12.11. 3dMVM Validator
- 12.12. Automatic Images
- 12.13. Sound features in AFNI
- 12.14. Working with ROIs
- 12.15. Using FreeSurfer
- 12.16. Reface and Deface datasets
- 12.17. SurfLayers Demo
- 12.18. Meta analysis examples
- 13. Demo Material
- 14. Codex: AFNI Code Examples from publications
- 15. Citations and Reference Works
- 16. Developer Documentation
- 17. Contributors
- 18. Glossary
- 19. Main AFNI pages