Table of Contents
- 1. Installation and Background
- 2. Educational resources
- 3. All program helps
- 4. AFNI Codex: Code Examples from publications
- 5. SUMA
- 6. FATCAT
- 7. Statistics
- 8. Templates & Atlases
- 9. Non-human processing
- 10. Tutorials, Examples
- 10.1. Self Guided Demo Scripts
- 10.2. AFNI GUI features
- 10.3. AFNI general behavior
- 10.4. APQC: afni_proc.py quality control
- 10.5. FATCAT: DWI {Pre-pre-, Pre-, Post-pre}processing
- 10.6. FATCAT Visualization
- 10.7. Walnut Brain
- 10.8. Drawing ROIs
- 10.9. Cluster Explorer
- 10.10. FATCAT Matrix Plot
- 10.11. 3dMVM Validator
- 10.12. Automatic Images
- 10.13. Sound features in AFNI
- 10.14. Working with ROIs
- 10.15. Using FreeSurfer
- 10.16. Reface and Deface datasets
- 10.17. SurfLayers Demo
- 10.18. Meta analysis examples
- 11. Demo Material
- 12. Developer Documentation
- 13. References, papers and citations
- 14. Contributors
- 15. Glossary
- 16. Main AFNI pages