AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 25, 2022 07:10AM
> I am actually using the z values sub-brick to threshold, and then the sub-brick before as overlay. Is that what you mean?

Yes, this is usually preferable.

> we found that values of -0.07 (for example) are very hard to grasp on their own.

Depending on the context, that value may have some physical meaning and is interpretable, unlike statistical value (which is dimensionless).

> do you know any reference that mentions the differences between the chi-square sub-brick and the one that includes
> directions and explains why it is possible to take either either one as a source for group x time interactions?

These two statistical values are computed from two different perspectives. The first one with chi-square is considered an omnibus test: it's usually computed as F-statistics under the conventional AOVA; in 3dLMEr it's assessed with chi-square. An omnibus statistics is usually formulated across two or more effects. The second one (Z-statistic) is assessed as a contrast between two groups: this is a special case for the omnibus test between two effects. These two are equivalent simply because there are only two groups in your case. If you had three groups, you would not have this equivalence situation.

Gang



Edited 1 time(s). Last edit at 08/25/2022 07:11AM by Gang.
Subject Author Posted

3dlmer correct words for reporting results main effects and contrasts

AFNIuser007 July 04, 2022 09:35AM

Re: 3dlmer correct words for reporting results main effects and contrasts

gang July 05, 2022 04:49PM

Re: 3dlmer correct words for reporting results main effects and contrasts

AFNIuser007 July 07, 2022 03:35PM

Re: 3dlmer correct words for reporting results main effects and contrasts

gang July 11, 2022 10:12AM

Re: 3dlmer correct words for reporting results main effects and contrasts

AFNIuser007 July 12, 2022 06:53AM

Re: 3dlmer correct words for reporting results main effects and contrasts

AFNIuser007 August 23, 2022 11:45AM

Re: 3dlmer correct words for reporting results main effects and contrasts

gang August 24, 2022 01:58PM

Re: 3dlmer correct words for reporting results main effects and contrasts

AFNIuser007 August 24, 2022 08:24PM

Re: 3dlmer correct words for reporting results main effects and contrasts

gang August 25, 2022 07:10AM