AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 20, 2022 02:47PM
That is only a warning to let you know that you are dealing with an oblique dataset. As the warning indicates, there can be problems mixing data of differing obliquity, and these may not display correctly with differently oblique datasets in the AFNI GUI. If you already know that, then you can safely ignore that warning. There is an environment variable to turn that off, AFNI_NO_OBLIQUE_WARNING, that you can set to YES in your .afnirc file.

The bigger question is what these datasets are and what you are trying to do with them. The mask seems to be in a standard space (+tlrc view of the dataset), and your dataset is oblique, unlikely for a dataset in a standard template space. If the two are in different spaces, then resampling isn't what you want to do; you need to apply spatial transformations to either the mask or to the original dataset to bring it into the space of the other. Maybe, you've picked the wrong datasets for this operation?
Subject Author Posted

How to fix oblique dataset issue

Fizza August 19, 2022 04:28PM

Re: How to fix oblique dataset issue

Daniel Glen August 20, 2022 02:47PM