AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mradoman
September 29, 2022 09:11AM
I ran the commands you recommended on a sample file:

3dinfo -obliquity Common_tb5388_stress_bis_AvgMiddle2RunsREML_sm6_orig_mask_RAS.nii.gz

Output: 0.00

nifti_tool -disp_hdr -infiles Common_tb5388_stress_bis_AvgMiddle2RunsREML_sm6_orig_mask_RAS.nii.gz

Output: please see the attached image for the full output.

I've also ran the nifti_tool command on the output from the 3dlme and I'm attaching that as well.
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Attachments:
open | download - nifti_tool output_1stlevel.png (243.5 KB)
open | download - nifti_tool output_post3dlme.png (298.2 KB)
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Subject Author Posted

Results not aligning well with MNI space after 3dlme Attachments

mradoman September 28, 2022 04:30PM

Re: Results not aligning well with MNI space after 3dlme

ptaylor September 28, 2022 06:13PM

Re: Results not aligning well with MNI space after 3dlme Attachments

mradoman September 29, 2022 09:11AM

Re: Results not aligning well with MNI space after 3dlme

mradoman October 03, 2022 10:21AM