AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 28, 2022 04:30PM
Hi everyone,

My first level data has been co-registered to the standard MNI space (MNI_T1_2mm) and loads fine in MRIcroGL and FSLeyes. However, after running the 3dlme command, my result file no longer aligns well with the MNI space. Could you please help me understand what I might be doing wrong? I'm attaching the images to illustrate the problem.

Thank you in advance,
Milena
Attachments:
open | download - MNI space and example 1st level file.png (255.2 KB)
open | download - volume from 3dlme.png (272.6 KB)
Subject Author Posted

Results not aligning well with MNI space after 3dlme Attachments

mradoman September 28, 2022 04:30PM

Re: Results not aligning well with MNI space after 3dlme

ptaylor September 28, 2022 06:13PM

Re: Results not aligning well with MNI space after 3dlme Attachments

mradoman September 29, 2022 09:11AM

Re: Results not aligning well with MNI space after 3dlme

mradoman October 03, 2022 10:21AM