AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 06, 2022 08:45AM
I read your post again.

How can I use the entire timeseries to do the regresson if this is a live neuro feedback run?

Firstly, the first time we collect data is about 27 TRs into the run. The following TRs have not been generated yet. So I don't see how I can use the full run.
Secondly, if we did this but "backwards"
First time we calculate something: use TR 0 up until last TR to include (e.g. 0-27)
and so forth.
In the later feedbacks, we would get TR 0 - 428.
This would take more time. To get 400+ niftis. Concatinate, scale and run a regresson. Would take more than the 3 s we allow ourself as a delay betwen a scanned event and the feedback.

Long story short:
We can skip motion correction.
And if we find improments (reduction of activity in the chosen region over time) we can do the motion corrected version offline aftwerards and see if it stil holds up?

Best,
Robin
Subject Author Posted

Motion correction on full run vs Small part of run Attachments

Robin September 29, 2022 08:55AM

Re: Motion correction on full run vs Small part of run

rick reynolds September 29, 2022 09:53AM

Re: Motion correction on full run vs Small part of run

Robin September 29, 2022 11:38AM

Re: Motion correction on full run vs Small part of run

rick reynolds September 29, 2022 12:07PM

Re: Motion correction on full run vs Small part of run

Robin September 30, 2022 06:45AM

Re: Motion correction on full run vs Small part of run

Robin October 06, 2022 08:45AM

Re: Motion correction on full run vs Small part of run

rick reynolds October 06, 2022 12:41PM

Re: Motion correction on full run vs Small part of run

Robin October 07, 2022 05:39AM

Re: Motion correction on full run vs Small part of run

rick reynolds October 07, 2022 11:11AM

Re: Motion correction on full run vs Small part of run

Robin October 07, 2022 07:44PM

Re: Motion correction on full run vs Small part of run

rick reynolds October 17, 2022 09:17AM