AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
October 21, 2022 06:14AM
Hi, Asya-

You should be able to have the quality control HTML on any system. Can you please provide the output of: 
afni_system_check.py -check_all
?

If I understand the images you have posted correctly, it looks like the anatomical dataset has the wrong header information: in what should be axial slices, the dataset looks like a rotated sagittal view. Is that what it looks like before any processing?

Re. the obliquity warning---I think this is just a warning here; 4 degrees of obliquity should be a small amount.

Having the QC HTML would resolve some of these questions, I think, because it would show the initial EPI, anatomical and their overlay.

-pt
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Subject Author Posted

distortion and rotation of anat_final Attachments

AsyaCosmos October 18, 2022 02:51AM

Re: distortion and rotation of anat_final

ptaylor October 18, 2022 06:56AM

Re: distortion and rotation of anat_final Attachments

AsyaCosmos October 21, 2022 03:58AM

Re: distortion and rotation of anat_final

ptaylor October 21, 2022 06:14AM

Re: distortion and rotation of anat_final

AsyaCosmos October 24, 2022 08:50AM

Re: distortion and rotation of anat_final

ptaylor October 24, 2022 09:01AM

Re: distortion and rotation of anat_final

AsyaCosmos February 09, 2023 04:18AM