AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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discoraj
November 11, 2022 11:04AM
Hi,

I tried it with 2002 input files and it runs fine.
I think it it may be your really long file paths.
There is some limit in the shell to the number of characters that can be used as an argument.
Not sure what that is, but you may be running into that limit.

I think moving your data to a folder with a shorter path may be painful.
So maybe try modifying your csv file to remove this part of the path from each line (find / replace will be your friend): 
/media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/

Then go to that folder: 
cd /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/

And run @ClustExp_CatLab from that folder.
So 3dcopy will not have such a long argument list.

Let me know if that works.
If not, we can try something else.

thanks, Justin
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Subject Author Posted

@ClustExp_CatLab

mironside November 04, 2022 12:51PM

Re: @ClustExp_CatLab

discoraj November 07, 2022 07:45AM

Re: @ClustExp_CatLab

discoraj November 11, 2022 11:04AM