AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 17, 2022 10:47PM
Milena,

> was wondering whether it would have been better to just center both variables outside of 3dlme, then just
> multiply the two to get BC, and then enter centered percHDD, cravP and the two multiplied (i.e., BC) in the
> data table while listing zeroes under qVarCenters for all three variables (CravP, percHDD and BC)?

Yes, it makes more sense to manually center both variables for craving and binge drinking, and then add the product of their centered values. Also, set the center values as

-qVars 'Age,DaysDrk,percHDD,CravP,BC' \
-qVarCenters '35.9,17.26,0,0,0' \

>> Let's say I found a significant activation in putamen for the following contrast:
>> -gltLabel 1 'Male_stress_HDD_CravP' -gltCode 1 'Gender : 1*Male Task : 1*stress BC :' \
>> What's the best way to follow up that finding? I.e., how do I interpret this increased activation in the putamen?

For this interaction, the following two lines may help you sort out their interrelationship.

-gltCode 1 'Gender : 1*Male Task : 1*stress percHDD :'
-gltCode 1 'Gender : 1*Male Task : 1*stress CravP :'

Keep in mind that linearity is assumed in the current model. If nonlinearity exists, that may complicate the situation.

Gang
Subject Author Posted

3dlme with multiple covariates of interest

mradoman November 30, 2022 05:48PM

Re: 3dlme with multiple covariates of interest

gang December 01, 2022 10:02AM

Re: 3dlme with multiple covariates of interest

mradoman December 01, 2022 11:54AM

Re: 3dlme with multiple covariates of interest

gang December 02, 2022 02:50PM

Re: 3dlme with multiple covariates of interest

mradoman December 16, 2022 01:59PM

Re: 3dlme with multiple covariates of interest

gang December 17, 2022 10:47PM

Re: 3dlme with multiple covariates of interest

mradoman January 04, 2023 09:38AM

Re: 3dlme with multiple covariates of interest

gang January 04, 2023 11:55AM