Hello, AFNI experts,
May I get pieces of advice for aligning turbo-spin echo to the T1 3d image?
3dWarp -verb -card2oblique AK_expvol+orig -prefix AK_expvol02_deobl+orig AK_expvol02+orig
align_epi_anat.py \
-anat AK_expvol+orig \
-epi AK_expvol02_deobl+orig \
-epi_base 5 \
-epi2anat \
-volreg off \
-anat_has_skull yes \
-deoblique off \
-suffix _al_aligned
As the script depicts, a partial 3d image (TSE, AK_expvol02) was deoblique processed. And then, it was aligned to the T1 image (AK_expvol+orig). However, the alignment was not successful, as you can see in the screenshot. In this case, what can I try to align perfectly?
As you can see in some screenshots, the two 3d images have a different gap between the voxels. Is the different size of the voxel gap across two different 3d images the matter?
Edited 1 time(s). Last edit at 02/06/2023 01:53PM by shjung.
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Aligned_brain.png
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Screenshot 2023-02-06 at 12.40.29.png
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