AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
February 15, 2023 06:32AM
Hi, Sahithyan-

Ah, thanks for pointing that out. I have just updated those links in the documentation here:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/template_atlas/sswarper_base.html#reference-templates-for-sswarper
Please let us know if that doesn't work.

For citing, we usually just cite the workhorse nonlinear warping program at the heart of @SSwarper, which is 3dQwarp, whose citation is:
Cox RW, Glen DR (2013). Nonlinear warping in AFNI. Presented at the 19th Annual Meeting of the Organization for Human Brain Mapping.
https://afni.nimh.nih.gov/pub/dist/HBM2013/Cox_Poster_HBM2013.pdf
E.g., "@SSwarper was used for both skullstripping the anatomical and estimating its nonlinear alignment to template space (via AFNI's 3dQwarp (Cox and Glen, 2013))."

--pt



Edited 1 time(s). Last edit at 02/15/2023 06:32AM by ptaylor.
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Subject Author Posted

SSwarper base volumes

Sahithyan February 15, 2023 02:32AM

Re: SSwarper base volumes

ptaylor February 15, 2023 06:32AM

Re: SSwarper base volumes

Sahithyan February 15, 2023 09:46AM