AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 23, 2023 02:16PM
Hey Rick!

Yup that's where I downloaded R packages to. I attached a photo of all the contents in it.

I'm running into a new issue now. things worked well for @SSwarper which was my first goal. But when i add the option
-SSopt '-blur_fwhm 2'
I get
-SSopt: command not found

Is it obvious why this command would work:
xvfb-run vglrun -d egl @SSwarper \
-input $work/control_$1/t1_hr.nii \
-base /home/coopapap/AFNIbin/MNI152_2009_template_SSW.nii.gz \
-subid control_$1 \
-odir $directory_sswarper

but not this one:
xvfb-run vglrun -d egl @SSwarper \
-input $work/control_$1/t1_hr.nii \
-base /home/coopapap/AFNIbin/MNI152_2009_template_SSW.nii.gz \
-subid control_$1 \
-odir $directory_sswarper
-SSopt '-blur_fwhm 2'
Attachments:
open | download - R.png (76.4 KB)
Subject Author Posted

Cannot execute binary files

coopapap February 18, 2023 03:21PM

Re: Cannot execute binary files

rick reynolds February 18, 2023 09:31PM

Re: Cannot execute binary files

coopapap February 20, 2023 01:21PM

Re: Cannot execute binary files

rick reynolds February 20, 2023 02:04PM

Re: Cannot execute binary files

coopapap February 21, 2023 02:08PM

Re: Cannot execute binary files

rick reynolds February 22, 2023 04:11PM

Re: Cannot execute binary files Attachments

coopapap February 23, 2023 02:16PM

Re: Cannot execute binary files

rick reynolds February 23, 2023 02:40PM