Hey Rick!
Yup that's where I downloaded R packages to. I attached a photo of all the contents in it.
I'm running into a new issue now. things worked well for @SSwarper which was my first goal. But when i add the option
-SSopt '-blur_fwhm 2'
I get
-SSopt: command not found
Is it obvious why this command would work:
xvfb-run vglrun -d egl @SSwarper \
-input $work/control_$1/t1_hr.nii \
-base /home/coopapap/AFNIbin/MNI152_2009_template_SSW.nii.gz \
-subid control_$1 \
-odir $directory_sswarper
but not this one:
xvfb-run vglrun -d egl @SSwarper \
-input $work/control_$1/t1_hr.nii \
-base /home/coopapap/AFNIbin/MNI152_2009_template_SSW.nii.gz \
-subid control_$1 \
-odir $directory_sswarper
-SSopt '-blur_fwhm 2'
