AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 01, 2023 09:31AM
Hi-

AFNI I/Os BRIK/HEAD format, as well as NIFTIs. If you would like the output to be a NIFTI file, then just include that extension in the output file prefix, such as:
3dLocalstat  -nbhd 'SPHERE(3)' -stat mean -automask -prefix DSET_OUTPUT.nii.gz DSET_INPUT

Just to note, there are some useful getting-to-know-AFNI and general MRI/FMRI analysis teaching materials here:
https://www.youtube.com/c/afnibootcamp
... and here:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/educational/main_toc.html

--pt
Subject Author Posted

3dLocalstat Error No-stat options given?

jbun0007 February 27, 2023 06:40PM

Re: 3dLocalstat Error No-stat options given?

ptaylor February 27, 2023 07:04PM

Re: 3dLocalstat Error No-stat options given?

jbun0007 February 28, 2023 06:57PM

Re: 3dLocalstat Error No-stat options given?

ptaylor March 01, 2023 09:31AM