AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 10, 2023 04:53PM
Hello Afniacs.

I am trying to analyze some multi-echo fMRI data and I've been stumbling over RetroTS.py. The first problem is that when I went to look at the help file online (https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/programs/alpha/RetroTS.py_sphx.html#ahelp-retrots-py), the following message was displayed:

Traceback (most recent call last):
File "/home/afniHQ/afni.build/pub.dist/bin/linux_ubuntu_16_64/RetroTS.py", line 28, in <module>
from lib_RetroTS.PeakFinder import peak_finder
File "/home/afniHQ/afni.build/pub.dist/bin/linux_ubuntu_16_64/lib_RetroTS/PeakFinder.py", line 29, in <module>
from pylab import plot, subplot, show, text, figure

This is essentislly the same error I got when I ran RetroTS. I also got the following error:

from pylab import plot, subplot, show, text, figure
ModuleNotFoundError: No module named 'pylab'

I'm running afni ver. 23.0.07 on a linux cluster ( Ubuntu 16.04.7 LTS)

My second issue is a question: How do I handle the number of slices per TR? The ME-fMRI data has 3 TEs (so there are 3 TEs/slice/TR) is the slice count n, or n*3?

Thanks for any help you can provide.

Alex
Subject Author Posted

ME-fMRI and RetroTS.py

axlander1 April 10, 2023 04:53PM

Re: ME-fMRI and RetroTS.py

ptaylor April 10, 2023 05:12PM

Re: ME-fMRI and RetroTS.py

axlander1 April 11, 2023 01:40PM

Re: ME-fMRI and RetroTS.py

ptaylor April 11, 2023 05:43PM

Re: ME-fMRI and RetroTS.py

axlander1 April 12, 2023 02:00PM

Re: ME-fMRI and RetroTS.py

ptaylor April 12, 2023 10:41PM