It looks like some commands/functions didn't update properly when we updated our binaries:

-------------------------------- general ---------------------------------
architecture: 64bit
cpu type: x86_64
system: Linux
release: 5.4.0-148-generic
version: #165-Ubuntu SMP Tue Apr 18 08:53:12 UTC 2023
distribution: Ubuntu 20.04 focal
number of CPUs: 52
apparent login shell: tcsh
shell RC file: .cshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /software/afni_23_1_02/abin//afni
afni version : Precompiled binary linux_openmp_64: May 8 2023
: AFNI_23.1.05 'Publius Helvius Pertinax'
AFNI_version.txt : AFNI_23.1.05, linux_openmp_64, May 08 2023
which python : /usr/bin/python
python version : 2.7.18
which R : /usr/bin/R
R version : R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
which tcsh : /usr/bin/tcsh

instances of various programs found in PATH:
afni : 1 (/software/afni_23_1_02/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.8)


testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : FAILURE
3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
uber_subject.py : success
3dAllineate : success
3dRSFC : FAILURE
3dRSFC: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
SurfMesh : success
3dClustSim : success
3dMVM : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

R RHOME : /usr/lib/R

checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : missing

------------------------------ python libs -------------------------------
** failed to load module PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is required

-------------------------------- env vars --------------------------------
PATH = /software/freesurfer/bin:/software/freesurfer/fsfast/bin:/software/freesurfer/tktools:/software/fsl/fsl6/bin:/software/freesurfer/mni/bin:/software/fsl/fsl6/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/software/afni_23_1_02/abin/:/software/freesurfer_6.0.0/freesurfer/:/software/dsi-studio/:/software/cfmri/pipelines/fmritools/:/software/cfmri/pipelines/topup_scripts/:/software/cfmri/pipelines/generic_recon_release/:/software/cfmri/pipelines/topup_scripts_siemens/:/software/cfmri/pipelines/mux_epi_recon_cfmri/:/data/asimmons_group/data/scripts/

PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

----------------------------- eval dot files -----------------------------

-- no .tcshrc, will create one as a follower of .cshrc
-- considered operations: path, flatdir, apsearch
(not on a mac, should skip flatdir)

-- note: followers should not need edits, so edit flags should be 0
(have 1 follower(s), which can be ignored)

dot file test : want 1 modifications across 2 files:

file path flatdir apsearch follower
--------------- ---- ------- -------- --------
.tcshrc 0 0 0 1
.cshrc 0 0 1 0

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/data/random/AFNIexample (15940320M Avail)
top history: ...Nov 2022 [rickr]: s05: added align_unifize_epi local
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /software/afni_23_1_02/abin/

------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 2.0.9 (amd64)

have Ubuntu system: Ubuntu 20.04 focal

========================= summary, please fix: =========================
* AFNI programs show FAILURE
* please run: cp /software/afni_23_1_02/abin//AFNI.afnirc ~/.afnirc
* please run: "suma -update_env" for .sumarc
* please run: apsearch -update_all_afni_help
* python library matplotlib is required
(see AFNI install docs for details)
* dot file test : want 1 modifications across 2 files:
* insufficient data for AFNI bootcamp
(see "Prepare for Bootcamp" on install pages)