Hi again,
I have acquired oblique slices (22 sl) (functional) and coronal slices (124)(anatomical)
In order to align the anatomical images with the functional images I have executed the following command:
3drotate -rotparent 3dinh_all+orig -gridparent cor124+orig -prefix 3drot 3dinh_all+orig
the 3dinhib_all+orig is the concatenated functional runs that went through volreg {e.g. 3dvolreg –Fourier –twopass –prefix 3dinh_all –base 1 –dfile 3dmotion.1D inh_all+orig}
Please advise if the 3drotate command is correct.
Thanks,
Jasmin