Hi. I am trying to use to3d on the output of a standard permutation of the epirecon script. Niether the stimulate.sdt nor the .img files (created from the epirecon output with a script) will load. The parameters are TR 2000 matrix 64x64 197 acquisitions 29 5mm thick no skip. The command line I am using is
to3d -time:zt 29 197 2000 alt+z '3D:0:0:64:64:5713:*.img'
The error I am getting is :
Counting images total= 12545 2D slices
***Number of slices on command line = 12545
***Number of slices needed for -time = 5713
The data was acquired on a 3T GE magnet. Any thoughts? It clearly thinks that there are many more slices than there are in directory. Though- it is no obvious multiple.
Thanks,
Nicole P
