AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Aimee Nelson
November 21, 2003 01:48PM
Rich,

All is well. I am using the exact file that I sent you; 31457280 for jes11-17-1-12.sdt and also contained within the directory is jes11-17-1-12.spr that is 56

Here's what I have done .....
FMRI_2>4swap jes11-17-1-12.sdt
-- opened jes11-17-1-12.sdt........

Then ......
FMRI_2>to3d -epan -prefix new_name -xFOV 100.0R-L -yFOV 100.0A-P -time:zt 8 240 1000 seq+z 3Di:0:0:64:64:1920:jes11-17-1-12.sdt


This creates a scrambled image when I click on 'View image' in the to3d.

However, if I use the 4swap command line twice on the data, the image looks correct (and then use the to3d command) the image looks correct, even in AFNI.

So, very good news in that the image is correct when viewed in afni (8 slices) & the timeseries is also present. My only question is what exactly the 4swap does - but I will check the documentation. I haven taken up enough of your time. Thanks again for your (and Rick's help).
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Subject Author Posted

to3d

Aimee Nelson November 19, 2003 04:31PM

Re: to3d

rick reynolds November 19, 2003 04:49PM

Re: to3d

Aimee Nelson November 19, 2003 07:38PM

Re: to3d

rick reynolds November 19, 2003 07:51PM

Re: to3d

Aimee Nelson November 19, 2003 08:16PM

Re: to3d

rick reynolds November 19, 2003 09:14PM

Re: to3d

Aimee Nelson November 20, 2003 10:01AM

Re: to3d

Rich Hammett November 20, 2003 12:08PM

Re: to3d

Aimee Nelson November 20, 2003 12:31PM

Re: to3d

Rich Hammett November 20, 2003 12:36PM

Re: to3d

Aimee Nelson November 20, 2003 12:47PM

Re: to3d

Aimee Nelson November 20, 2003 12:34PM

Re: to3d

Rich Hammett November 20, 2003 12:48PM

Re: to3d

Aimee Nelson November 20, 2003 04:24PM

Re: to3d

Rich Hammett November 20, 2003 09:44PM

Re: to3d

Aimee Nelson November 21, 2003 11:05AM

Re: to3d

Rich Hammett November 21, 2003 12:17PM

Re: to3d

Aimee Nelson November 21, 2003 01:48PM

Re: to3d

Rich Hammett November 21, 2003 01:59PM