AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
December 04, 2003 10:52AM
Hi.
I have used 3dmerge to create clusters and cluster orders (see below). When I view the cluster orders everything looks good. But, the view of activation clusters (1clust results) after selecting the corresponding F-value on the slide bar (e.g., 2.632), the results are not identical to those of cluster orders (1clust_order). Why would this be?
Darren

set myradius = 7
set myvolume = 663

set myRxNgPsF = 2.632
set myGrpF = 4.89
set myRxNgPsxGF = 2.632

3dmerge \
-1thresh ${myGrpF}\
-1clust ${myradius} ${myvolume}\
-1dindex 2\
-1tindex 3\
-prefix ${myprefix}GrpF${myGrpF}R${myradius}V${myvolume}\
${mybucket}+tlrc

3dmerge \
-1thresh ${myGrpF}\
-1clust_order ${myradius} ${myvolume}\
-1dindex 2\
-1tindex 3\
-prefix ${myprefix}GrpOrdF${myGrpF}R${myradius}V${myvolume}\
${mybucket}+tlrc

# Masking Datsets

3dcalc -a ${myfuncmask}+tlrc\
-b ${myprefix}GrpF${myGrpF}R${myradius}V${myvolume}+tlrc\
-expr "a*b" \
-prefix ${mascprefix}GrpF${myGrpF}R${myradius}V${myvolume}masc

3dcalc -a ${myfuncmask}+tlrc\
-b ${myprefix}GrpOrdF${myGrpF}R${myradius}V${myvolume}+tlrc\
-expr "a*b" \
-prefix ${mascprefix}GrpOrdF${myGrpF}R${myradius}V${myvolume}masc

# After masking I put everything together.

3dbucket -prefix ${genprefix}R${myradius}V${myvolume}masc+tlrc \
-fbuc ${mascprefix}GrpF${myGrpF}R${myradius}V${myvolume}masc+tlrc \
-fbuc ${mascprefix}GrpOrdF${myGrpF}R${myradius}V${myvolume}masc+tlrc \
-fbuc ${mybucket}+tlrc'[3]' \

3drefit \
-sublabel 0 Grp \
-sublabel 1 GrpOrd \
${genprefix}R${myradius}V${myvolume}masc+tlrc

Subject Author Posted

clusters identification consistency

Darren Campbell December 04, 2003 10:52AM

Re: clusters identification consistency

Darren Campbell December 04, 2003 03:27PM

Re: clusters identification consistency

Jim Eliassen December 05, 2003 09:27AM

Re: clusters identification consistency

Darren Campbell December 05, 2003 11:01AM

Re: clusters identification consistency

Jim Eliassen December 05, 2003 11:48AM

Re: clusters identification consistency

Darren Campbell December 05, 2003 01:06PM

Re: clusters identification consistency

Jim Eliassen December 05, 2003 02:27PM