Hi all,
I am having troubles using 3drotate on my minc files. Specifically, I am trying to use 3drotate to realign a series of volumes according to motion parameters estimated by 3dvolreg.
The command line I am using is something like:
3drotate -verbose -dfile funct2_MC.log -Fourier -prefix funct2_MC funct2.mnc
The output looks fine to me:
+++ 20 sub-bricks: 0..1..2..3.[skip].4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..
+++ CPU time= 0.08 s [= 0.004 s/sub-brick]
+++ Writing dataset to disk in ./funct2_MC+orig.HEAD
The only trouble is: no file ever gets written. A very similar commandline, using 3dvolreg to realign the data works fine, and produces correct output.
I am using the binaries from the AFNI website, either under SGI or Linux.
What am I missing? Thank you for your help!
Jan
