AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Ziad Saad
January 14, 2004 10:56AM
Hi Jeremy,

It is best that you transform the t values in your .1D file with p values using the program 1deval wich performs operations like 3dcalc but using 1D files for input. For help on the type of operations possible with 1deval, look at the help for 3dcalc.
Lookfor "statistical conversions" in the output of 3dcalc -help, you have all sorts of statistical conversions that you can make.

You will need to provide parameters for the conversions. These parameters are stored in the field: BRICK_STATAUX in the .HEAD file of the dataset from which you extracted the statistics.
Read about BRICK_STATAUX in README.attributes file and use the program 3dAttributes to easily pull these parameters out.

If you don't have a volume with the statistics (I suspect you carried out the statistical analysis on the surfaces directly), you will have to supply the parameters by yourself. For a T statistic, all you need is the degrees of freedom.

cheers,
-z
Subject Author Posted

inputting 1D files to 3dFDR

Jeremy Skipper January 13, 2004 05:16PM

Re: inputting 1D files to 3dFDR

Ziad Saad January 14, 2004 10:56AM

Re: inputting 1D files to 3dFDR

Jeremy Skipper January 14, 2004 01:21PM

Re: inputting 1D files to 3dFDR

Jeremy Skipper February 17, 2004 03:44PM

Re: inputting 1D files to 3dFDR

Anthony February 19, 2009 10:59AM

Re: inputting 1D files to 3dFDR

Anthony February 19, 2009 11:04AM

Re: inputting 1D files to 3dFDR

Anthony April 22, 2009 04:35PM