AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 04, 2005 02:18AM
Hi Jed,

I am wondering how to draw on an EPI dataset. When I opened the "draw dataset" window and clicked the button "choose dataset ...", I could not see the ROI+orig file (of course, the original space was selected).

I don't know the reason. I can only draw mask on a +tlrc dataset.

I am really wish to know how to draw mask on a +orig dataset, because I want to modify a existing +orig mask into a bigger extended one.

Could you tell me?

Many thanks!

Jed Meltzer wrote:

> I've been doing a lot of this sort of thing lately, so here's
> my 2 cents on the issue (hey, I just noticed for the first time
> that there's no "cent-symbol" on a keyboard. But anyway...)
>
> When I draw ROIS, I find it much more reassuring to draw them
> directly on the EPI image. It's really surprising how poor the
> resolution of these is if you're used to looking at
> interpolated functional maps overlaid on anatomical images.
> It's easy to do this kind of drawing in AFNI. Just open two
> windows "locked together." In one, draw the ROI on top of your
> EPI image, and in the other have the coregistered anatomical
> image with the ROI dataset (currently being drawn) set as the
> functional overlay. That way, you get to control directly
> which voxels are chosen, while at the same time seeing them
> appear (as disturbingly large chunks!) on the anatomical image,
> and it's not any more effort than drawing on the anatomicals.
> -Jed
Subject Author Posted

ROIs--resampling to EPI resolution

Jane Lange February 04, 2004 01:31PM

Re: ROIs--resampling to EPI resolution

Ziad Saad February 05, 2004 11:45AM

Re: ROIs--resampling to EPI resolution

bob cox February 05, 2004 11:52AM

Re: ROIs--resampling to EPI resolution

Jane Lange February 05, 2004 04:09PM

Re: ROIs--resampling to EPI resolution

Jed Meltzer February 05, 2004 10:14PM

Re: ROIs--resampling to EPI resolution

Jane Lange February 06, 2004 12:41PM

Re: ROIs--resampling to EPI resolution

Min Bao December 04, 2005 02:18AM

Re: ROIs--resampling to EPI resolution

bob cox December 04, 2005 10:20AM

Re: ROIs--resampling to EPI resolution

Robert Cox February 06, 2004 11:02AM