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February 29, 2004 09:32AM
I'm having some trouble with 3dfim+, getting all zeros in the bucket file.

> 3dfim+ -input all+orig -ideal_file profile.1D -out All -bucket buc1

> 3dinfo buc1+orig
Dataset File: buc1+orig
Identifier Code: XYZ_JUy7AZCVDQvR41mkcQ2hrg Creation Date: Wed Feb 25 20:01:45 2004
Dataset Type: Func-Bucket (-fbuc)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK file
Data Axes Orientation:
first (x) = Left-to-Right
second (y) = Anterior-to-Posterior
third (z) = Superior-to-Inferior [-orient LAS]
R-to-L extent: -118.125 [R] -to- 118.125 [L] -step- 3.750 mm [ 64 voxels]
A-to-P extent: -148.125 [A] -to- 148.125 [P] -step- 3.750 mm [ 80 voxels]
I-to-S extent: -51.000 -to- 51.000 [S] -step- 6.000 mm [ 18 voxels]
Number of values stored at each pixel = 9
-- At sub-brick #0 'Fit Coef' datum type is short: 0 to 0
-- At sub-brick #1 '% Change' datum type is short: 0 to 0
-- At sub-brick #2 '% From Ave' datum type is short: 0 to 0
-- At sub-brick #3 'Baseline' datum type is short: 0 to 0
-- At sub-brick #4 'Average' datum type is short: 0 to 0
-- At sub-brick #5 'Correlation' datum type is short: 0 to 0
statcode = fico; statpar = 40 1 2
-- At sub-brick #6 '% From Top' datum type is short: 0 to 0
-- At sub-brick #7 'Topline' datum type is short: 0 to 0
-- At sub-brick #8 'Sigma Resid' datum type is short: 0 to 0

But the AFNI plugin works, and so does 3dfim:

> 3dfim -input all+orig -ideal profile.1D -prefix buc2

> 3dinfo buc2+orig
Dataset File: buc2+orig
Identifier Code: XYZ_7O9U2IUVapRL2yNAH4jakA Creation Date: Wed Feb 25 20:04:47 2004
Dataset Type: Inten+Cor (-fico)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK file
Data Axes Orientation:
first (x) = Left-to-Right
second (y) = Anterior-to-Posterior
third (z) = Superior-to-Inferior [-orient LAS]
R-to-L extent: -118.125 [R] -to- 118.125 [L] -step- 3.750 mm [ 64 voxels]
A-to-P extent: -148.125 [A] -to- 148.125 [P] -step- 3.750 mm [ 80 voxels]
I-to-S extent: -51.000 -to- 51.000 [S] -step- 6.000 mm [ 18 voxels]
Number of values stored at each pixel = 2
-- At sub-brick #0 '#0' datum type is short: -16388 to 32767 [internal]
[* 0.00868559] -142.339 to 284.601 [scaled]
-- At sub-brick #1 '#1' datum type is short: -6185 to 8677 [internal]
[* 1e-04] -0.6185 to 0.8677 [scaled]
statcode = fico; statpar = 40 1 2
Auxiliary functional statistical parameters:
SAMPLES FIT-PARAMETERS ORT-PARAMETERS
40 1 2

I'm running it on a linux_gcc32 platform, in case it matters. Any HELP?

Subject Author Posted

3dfim+

kevin February 05, 2004 03:42PM

Re: 3dfim+

rick reynolds February 05, 2004 09:43PM

Re: 3dfim+

kevin February 06, 2004 09:37AM

Re: 3dfim+

rick reynolds February 06, 2004 04:15PM

Re: 3dfim+

kevin February 07, 2004 05:22PM

Re: 3dfim+

Jeff Orchard February 25, 2004 07:50PM

All zeros from 3dfim+

Jeff Orchard February 29, 2004 09:32AM

Re: 3dfim+

kevin March 13, 2004 12:50PM

Re: 3dfim+

rick reynolds March 13, 2004 04:37PM

Re: 3dfim+

kevin March 13, 2004 06:59PM

Re: 3dfim+

rick reynolds March 15, 2004 02:21PM