I am having trouble inputting Siemens Mosaic images from an Allegra scanner:
In a few places, it says to3d can now read Siemens Mosaic images, and it is true that it does, with the gui. However, I am having a problem accurately reading in the Siemens Mosaic series as 3D+time series (for the functional scans). There are 580 files (timepoints) with 50 slices in each file. I am using something like:
to3d -prefix test -time:zt 50 580 3000 zero '3ds:-1:0:64:64:50:*.dcm'
but using this command, each image is a mixture of parts of other images, so obviously it is not working. I have tried a number of other options, but nothing seems to get the images in correctly. Any assistance would be appreciated.
Thanks, M. Bradley
